rs36885767 SNP Detail

Summary

• ID
  rs36885767
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113281948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTACCGC CTCATGACAA
  CAATAAAGCT CATCTTACGC AGTCTCTGTC TCATGGGTGT TGGAGAGGGA GACTGAGGGA
  CCCAGAGCCT GGGGTCACAT CAAGAGTGAG GGAGTAATGA TAACTTCAGT GAGGTTAACA
  TCCATCCTAA TGCACTCATC CAGTCACTTC TATATAAAAT TTCAAATATT GTAAGAAAAC
  K
  TGTGGGCTGG TGAGATGGCT CAGTGGCTAA GAGAACTGAC TGCCCTTCCA AAGGTCCTGA
  GTTCAAATCC CAGCAACCAC ACTGTGGTTC ACAACCACCA TTAATGAGAT TTGATACCCT
  CTTCTTGTGT GTCTGAAGAC AGCTACAGTG TACTTATATA TAATAATAAA TAAATTTTTG
  GGCCGGAGCA AGCAAGATCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51842534	NES14762369	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36885767					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51842534	NES14762369	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113281948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17838	CpG island 17838	1329 bp proximal
Cpne9	copine family member IX	within coordinates
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	638 bp downstream
Gm67816	predicted gene, 67816	634 bp downstream
Rr399829	regulatory region 399829	1385 bp upstream
Rr636483	regulatory region 636483	548 bp proximal
Rr636484	regulatory region 636484	1660 bp proximal
Tssr58189	transcription start site region 58189	1963 bp upstream