rs36886136 SNP Detail

Summary

• ID
  rs36886136
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:47387508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTTGCTC CTCAGCTCCC
  ATGAGGCGAA TCCCACTCCA ACTTCTGCCA CTTGCTTCCG CCCCCACATC CTCCGTCATC
  CTAGAACCAA TGTGTGTCAT CTACTTGTAA GCAAAGGCGA AGTGAAACTG CCAAAATTAG
  ACAGCTCTGT GGGTGAAGGA AAACAGTTTA TTCAACCACC AAGGCTGTCT CCTGGGATTC
  R
  GAGAAAACAG CATGGATATC GGCAGAGTCC TGCCAGTTAG AAGGAGACAT GTTGCAGCGG
  GTGGAGGGTG GGTTAGCTGG AGCGGCCTGG GAACGAGCAT GGGGCTCTGA CCCACTGGGG
  AACTGTTTAA GTTAATAGGG AACTCAATGC AATTTCCGGA GACTGCAGGA GCTTATAAGA
  AGGTAACAGT TTTCATGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51959744	NES14967645	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36886136					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51959744	NES14967645	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:47387508 () rs orientation: forward

Symbol	Name	Function Class
Gm64146	predicted gene, 64146	351 bp downstream
Rr663147	regulatory region 663147	within coordinates
Rr663148	regulatory region 663148	336 bp proximal
Rr663149	regulatory region 663149	618 bp proximal
Rr663150	regulatory region 663150	1665 bp proximal
Rr663151	regulatory region 663151	1820 bp proximal
Tssr77327	transcription start site region 77327	4 bp upstream