rs36886279 SNP Detail

Summary

• ID
  rs36886279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:121067730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAAGCC TGCCGGGATT
  GATGGCCCCC TCACCGCCCA AATAGATCAA TTCTAGACTT TTATTTAATG AGACAGCCAG
  GGAGAAATCA CTACTTCCCA TCACCGATAG ATGGTCCGAT CTGCCTTTCA ATCAAGCACA
  TTTCAAATGT ATTCATAGAA TACGTTTCAC ACCTCCTCTG TCGTGTTTAT TATGCTTCTG
  R
  TTCTGCGCTG TTGCAAATGC ATAGCTGAAG CTGGCTCTGC TGTAAACTGT CTTAAAATAA
  CAAAATTCTG AGACCAGATC AATGCTTTGT TGGGCCCTGT GTGTGTCCAT TTAACAAAAA
  GTCACTTTGT GCAGAAATGA CTCACTCTTG TACTGTTCTT CTGGCTAGGA TAGGCTGGGC
  GGGGCTACGC TACAGAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51569596	NES14614245	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G		G
ss324851439	CHEV_14_121229540	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36886279					SNP	G	G	G	G	G	G	A	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51569596	NES14614245	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:121067730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6879	CpG island 6879	1604 bp proximal
Rr287001	regulatory region 287001	1530 bp distal
Rr287002	regulatory region 287002	730 bp distal
Rr287003	regulatory region 287003	1271 bp proximal
Rr390218	regulatory region 390218	1744 bp upstream
Rr404289	regulatory region 404289	1482 bp upstream