rs36886514 SNP Detail

Summary

• ID
  rs36886514
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:45476451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATGGCCG GTTTGTCCAC
  CAACACAACG GTGGTGGTGC ACGTGCGGGA TGAGAACGAC AACCCGCCCG TTTTCACGCA
  GGCAGAATAT TCAGGATTCA TCAGCGAGTC AGCCTCCGTC AACAGTGTGG TGCTGACAGA
  CAGGAACGTT CCGCTGGTGA TTCGAGCGAC GGATGCTGAC AGGGAATCCA ATGCTCTGCT
  Y
  GTCTATCAAA TCGTTGAGCC GTCCGTGCAC AACTATTTTG CTATTGACCC CACCACCGGC
  GCCATCCGTA CAGTGCTGAG TCTGGACTAT GAAGAAACAC ATGCTTTTCA CTTCACCGTC
  CAAGTGCACG ACATGGGGAC TCCTCGTCTG TTCGCCGAGT ACGCAGCGAA TGTGACTGTG
  CACGTGATCG ACATCAACGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51951874	NES14977632	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36886514					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51951874	NES14977632	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:45476451 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20293	CpG island 20293	1208 bp distal
Fat1	FAT atypical cadherin 1	within coordinates
Gm2366	predicted gene 2366	1029 bp upstream
Rr662826	regulatory region 662826	1040 bp distal
Rr662827	regulatory region 662827	770 bp distal
Tssr81148	transcription start site region 81148	1338 bp downstream