rs36886978 SNP Detail

Summary

• ID
  rs36886978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:187996300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCATAGAC TAGCTGAACT
  TTTGGTCCTA GCCTTATAGT CAAAAACTTT GACTAGACAG GTAGCTTTCT GAAGGCGTAG
  GGCTGTTTTA CTTACCTTTC TTTTCTCAAT AAACATTTCA CATAACAAAT CGAAGATGTT
  CAACAGTAGA GTTGAACATG CGGACAGCAC CCCACCTCCC TCACAGTACA GTCTTTGACC
  Y
  ACGTGGTGTC CCCATCCTCA GAGGTTCTTA AGAGCTCCCC AGCTCTTGAG TCTGTTAAGG
  ATGCCCTCGA CGTGAATGGG AGTGAAGCTT CCATGTGACC AACTTTGGTT GGTGCAGTCG
  TGAACTCTTC CTGCTGTCAC CTCTTCTCTC AGTGACAGTT GACTGCCGTG CCTTAAGTAA
  TACAAGGCCT GTTTAGAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51416316	NES14451706	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36886978					SNP	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51416316	NES14451706	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:187996300 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1191	CpG island 1191	637 bp distal
Tssr368	transcription start site region 368	1200 bp downstream
Ush2a	usherin	within coordinates