rs36887080 SNP Detail

Summary

• ID
  rs36887080
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11349297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGAAGTT CTTAGAACTC
  ATCCTTCTTA CCAAAAATAT CAAAACAATA TATAAACAAA TACATTTTCA AGGAAAGAAC
  TGAAAGAGAA CACAGAGATA CAGTACAAAG ATGCTGTAAA TCATACAGAG CACTCGAGTG
  GCTATAATTT TGGGTTGGGG TTAGGGGAGT ATCAATGAAA CTAGGATCTT CATGATCTTT
  K
  TTGCTCTGCC TTCCCAGAAA CTGGATCCTT CAGTGAATAT ACACAGCCTT TCCCCTTAGT
  AGATAGTACA GCATTTCCCA CTCTGGATAT GGAGTTTCAA CAGAAAAAAA AAAATAGCCA
  TCTTTTCCCC CCAGTACCTG AATAGTCAGT CATGGTGCCC TGTCTACTTG GGAAATGGTA
  CCATTGTTGA TTCAAGCAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50596008	NES13637766	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G	G	T		G	G	G	G		G
ss325721051	CHEV_19_11446423	CHEVERUD	SCREENING_POP	f	SNP										T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36887080					SNP	G	G	T	G	G	G	G	G	T	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50596008	NES13637766	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11349297 () rs orientation: forward

Symbol	Name	Function Class
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Rr544325	regulatory region 544325	480 bp distal
Tssr155162	transcription start site region 155162	598 bp upstream
Tssr155163	transcription start site region 155163	608 bp upstream
Tssr155164	transcription start site region 155164	630 bp upstream
Tssr155165	transcription start site region 155165	724 bp upstream
Tssr155166	transcription start site region 155166	762 bp upstream
Tssr158339	transcription start site region 158339	309 bp downstream
Tssr158340	transcription start site region 158340	416 bp downstream
Tssr158341	transcription start site region 158341	443 bp downstream
Tssr158342	transcription start site region 158342	992 bp downstream