rs36887160 SNP Detail

Summary

• ID
  rs36887160
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:10982570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGTGCTCT GTAGACAAAC GACCAATTTG TTAACAGTAT
  CAGTTTTGAG CACTTGCATG CTTGGTGGCA TGCACCTCCA TCCGACTGTA CATTGGTATT
  K
  GCAACTGTCA CAAACCCTGA ACCAAATCTG AAGGCATTCC TTCTGTATTA GCTCAGAGAA
  TCCATTCCAA CCAGCCCCTT ACTAATATTG CCTGGTAGAT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51577114	NES14605691	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36887160					SNP	T	G	G	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51577114	NES14605691	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:10982570 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Amacr	alpha-methylacyl-CoA racemase			Intron
				Noncoding-Transcript-Variant
Gm34315	predicted gene, 34315			851 bp upstream
Rr499317	regulatory region 499317			718 bp distal
Rr499318	regulatory region 499318			within coordinates
Tssr130700	transcription start site region 130700			719 bp downstream
Tssr130701	transcription start site region 130701			679 bp downstream