rs3688738 SNP Detail

Summary

• ID
  rs3688738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101127302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGGGCTG TAAGTGAAGC
  AAGATGCCCA GCATGTGTGG AAATACTTTA TTATTTCCAC CCAGGCTTAT GTTCTGTGGG
  TGCTCCCTAG AACTGACAGT GCCCTCACGC CCAAAGAAGT CTCTTAAAAA CACCCCAGCC
  CTCAGGTTTT GTGTTTTCAC TTTTGAAAGA TATAAGGCAC AAGTCTTGAT GAAATTGTGA
  R
  TTTAGACACA ACTTTGTGAT TTTTCTTAAA GATTTATTTT AATTATGTGT ATATATGTAT
  GTGTTTATGC ACATCAGTGC AGTACCCACA AAGGCCAGAA GAGGGCATCA GATCCCCACT
  GGAGCCACAG GTTCAGGTGG TTGTGACCTG CCTGACTCAG GTGTTGGGAA CTGAACTCAG
  ATCCTCTGTA AGAGTTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J
ss5064829	WI_WGS_3_101331243	WI	MOUSE	f	SNP			A	G
ss135545485	ENSMUSSNP2118469	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J
rs3688738					SNP	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101127302 () rs orientation: forward

Symbol	Name	Function Class
Gm65590	predicted gene, 65590	within coordinates
Rr581978	regulatory region 581978	91 bp proximal