rs36887437 SNP Detail

Summary

• ID
  rs36887437
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5845877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAAATAA GCCTGTGTTT
  TATGCACAAA GAAGCACACA ATGAGAGATA TTTAGTTTTT ATTTCATAAA ATCAAAGTAT
  TCAATAAATA GTAGGAGGTG TGTCGACTCA GAGGTAATAA GACGAATTGG GCATAACCTG
  AAAGACAATG CAGTTAATTA TCAAGAGTTC AACACTGAGG CTGGGGAGTG TTCCAGTGAT
  R
  TCAGCTACCA TACCCAGAGC CTTTAGAACC CTCCAAGAAA AATGTAATGG CCTCATGATA
  TAAGAGTCAA GCAAAGACAC CGCAGGGACT TGAACCCCGT CCTGGAAACC AGGAGTGCCA
  GCCACCAGCG TCTTTTGCTT TTTTTTTTTT AAAGCTAGGG AAAGGCCAAA AAGCAAAACC
  TGAGAAAACA AAAGGTTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50577512	NES13649153	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36887437					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577512	NES13649153	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5845877 () rs orientation: forward

Symbol	Name	Function Class
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	within coordinates
Mascrna	Malat1-associated small cytoplasmic RNA	75 bp downstream
Rr543160	regulatory region 543160	1431 bp distal
Rr543161	regulatory region 543161	1605 bp proximal
Tssr5415	transcription start site region 5415	985 bp downstream
Tssr5416	transcription start site region 5416	1461 bp downstream
Tssr157645	transcription start site region 157645	504 bp downstream
Tssr157646	transcription start site region 157646	534 bp downstream
Tssr157647	transcription start site region 157647	696 bp downstream
Tssr157648	transcription start site region 157648	862 bp downstream
Tssr157649	transcription start site region 157649	962 bp downstream
Tssr157650	transcription start site region 157650	1021 bp downstream
Tssr157651	transcription start site region 157651	1075 bp downstream
Tssr157652	transcription start site region 157652	1212 bp downstream
Tssr157653	transcription start site region 157653	1329 bp downstream
Tssr157654	transcription start site region 157654	1372 bp downstream
Tssr157655	transcription start site region 157655	1409 bp downstream
Tssr157656	transcription start site region 157656	1439 bp downstream
Tssr157657	transcription start site region 157657	1561 bp downstream
Tssr157658	transcription start site region 157658	1613 bp downstream
Tssr157659	transcription start site region 157659	1716 bp downstream
Tssr157660	transcription start site region 157660	1869 bp downstream
Tssr157661	transcription start site region 157661	1890 bp downstream
Tssr157662	transcription start site region 157662	1995 bp downstream