rs36887711 SNP Detail

Summary

• ID
  rs36887711
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:66816555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGGGAA CACTCTTCCA
  GAATGTTCCA TAGGATCAGG AGGCAGGGAC AGAATGTGCA TTGGGGGTCA CTCAAGAAGC
  AAGGCCACAG TGACAGGACA CAGAGCACAA TGTCCAGTTG AGGAAACGGT GAGTACAAGC
  TGTAGCAAGT TCCTTTCCAG ACCTGACTGA GAACTCCAAC CTGCACTTTA GTAGTCAGGT
  Y
  AAGGTAGAGA AGGAGGTCAG CAGCTGCCCT TTCCTGACAA CCTTGGAAAA AAGGGTCCTT
  TGCTCTTACC CAAACTGGTG AAGGACTCCA GGAAGCATTT CAGCCAACTG ATCCATTGAG
  GGGTACATGT ACCTGTAGGG TATATGGGGA GGCAGATCTT GAGAACCCAG ACCCTGGGAG
  AAACAAATCG CCCATACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51706563	NES14571175	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36887711					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51706563	NES14571175	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66816555 () rs orientation: forward

Symbol	Name	Function Class
Ndrg1	N-myc downstream regulated gene 1	Intron
Rr503613	regulatory region 503613	758 bp proximal
Tssr134597	transcription start site region 134597	1570 bp upstream
Tssr134598	transcription start site region 134598	643 bp upstream