rs36888798 SNP Detail

Summary

• ID
  rs36888798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10582141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTTCTGG AACACAGACT
  GAAAGCTCTA GTGAGTTGTC TAAGATTGTG TTGCTGAGAG TTAGGACTTG AGCCCATGTC
  TAGTCTTGCT ACAAAGCCTA ATGTTTCCCC TTAGTCAACC AGTTTCCCAG AGTCAAGTCG
  AGTGCCAGCT GGGGAGGTAC AAATCATCTT CAGTTCCACC TGGTTCAAAC CTAGCTACAC
  Y
  GATCTCTGCC TCATTTGTAA AATAGGGAGT TAGCTCTCCT CCTCCGGCAT TCTGGAGATG
  CTTCAGGACT AGGCTTCTGC TGCTCCTCCT TTGGGGTTGG GGACATGGAG GCTGTCTGAT
  GAAGCCTGGG ACCTGCATCT GCGGGGCTGA TTGCACTAGT CACCTGGGTG TTTAGGCTCT
  TCCTGTGAAA TTCCTGCGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50601264	NES13643016	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36888798					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601264	NES13643016	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10582141 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10614	CpG island 10614	1727 bp distal
Cpgi10615	CpG island 10615	455 bp proximal
Ddb1	damage specific DNA binding protein 1	820 bp upstream
Gm59162	predicted gene, 59162	1724 bp downstream
Rr362968	regulatory region 362968	within coordinates
Rr405857	regulatory region 405857	578 bp upstream
Tkfc	triokinase, FMN cyclase	within coordinates
Tssr155068	transcription start site region 155068	762 bp upstream
Tssr155069	transcription start site region 155069	779 bp upstream
Tssr155070	transcription start site region 155070	850 bp upstream
Tssr155071	transcription start site region 155071	907 bp upstream
Tssr155072	transcription start site region 155072	1142 bp upstream
Tssr155073	transcription start site region 155073	1496 bp upstream
Tssr158200	transcription start site region 158200	462 bp upstream
Tssr158201	transcription start site region 158201	440 bp upstream
Tssr158202	transcription start site region 158202	410 bp upstream
Tssr158203	transcription start site region 158203	380 bp upstream
Tssr158204	transcription start site region 158204	588 bp downstream
Tssr158205	transcription start site region 158205	633 bp downstream
Tssr158206	transcription start site region 158206	690 bp downstream
Tssr158207	transcription start site region 158207	1091 bp downstream