rs3688886 SNP Detail

Summary

• ID
  rs3688886
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102490576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGCTTTTG GGCTACTTCA CAAATGGCAC TAGCTGCTTT
  GGAGAGATCG GTGAACCTAC ATGTGACCTC AAAAGCAAGT ATGAGGGTCT TCTCGGGACT
  R
  TATACTCGAG TCCTTGGTTC TGGCATTTTC TGGGGGCATG TTTAATAGAA ATCAAACTCC
  GCCAACTTTC GGTGAGGTGG TGGGTGGTGA GTGGAAAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss5064978	WI_WGS_2_103482589	WI	MOUSE	f	SNP	A			G	A
ss147119784	ENSMUSSNP4080467	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			A
ss320439907	CHEV_2_102500388	CHEVERUD	SCREENING_POP	f	SNP							A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs3688886					SNP	A	A	A	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102490576 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	476 bp distal
Gm57687	predicted gene, 57687	within coordinates
Rr561713	regulatory region 561713	1562 bp distal
Rr561714	regulatory region 561714	1419 bp distal
Rr561715	regulatory region 561715	940 bp distal
Rr561716	regulatory region 561716	155 bp distal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19098	transcription start site region 19098	1992 bp downstream
Tssr19099	transcription start site region 19099	1920 bp downstream
Tssr19100	transcription start site region 19100	1651 bp downstream
Tssr19101	transcription start site region 19101	1562 bp downstream
Tssr19102	transcription start site region 19102	1536 bp downstream
Tssr19103	transcription start site region 19103	1489 bp downstream
Tssr19104	transcription start site region 19104	1467 bp downstream
Tssr19105	transcription start site region 19105	1397 bp downstream
Tssr19106	transcription start site region 19106	1379 bp downstream
Tssr19107	transcription start site region 19107	1359 bp downstream
Tssr19108	transcription start site region 19108	1323 bp downstream
Tssr19109	transcription start site region 19109	1281 bp downstream
Tssr19110	transcription start site region 19110	999 bp downstream