rs3688964 SNP Detail

Summary

• ID
  rs3688964
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:13131679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGT GCCTTAGCAA GAGAACACCC
  S
  GCAGCATAAC TGGAAGAAGG GATGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5065057	WI_WGS_1_13146777	WI	MOUSE	f	SNP	C			G
ss45106416	mCV23066265	ABI	CRAMUS_MOUSE	f	SNP		C	C	G	C
ss148615009	ENSMUSSNP5236724	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			C
ss319642042	CHEV_1_13051536	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3688964					SNP	C	C	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13131679 () rs orientation: forward

Symbol	Name	Function Class
Gm5250	predicted gene 5250	570 bp upstream
Gm37162	predicted gene, 37162	1504 bp upstream
Rr370874	regulatory region 370874	860 bp downstream
Rr407842	regulatory region 407842	1914 bp distal
Tssr12	transcription start site region 12	1610 bp upstream