rs36889883 SNP Detail

Summary

• ID
  rs36889883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:25278282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCTTCTGA AGGTGGCACT GCTGTGAGTC TCTTTCATGG
  AGATTTGGTG TTGCACTGGT TCCTGCTAAA ACTTCATACT ACCTGGAGAA ATGCCCGAGC
  Y
  TGCCGGTCAG ACTTCCCAAT ACTAGGGAGG CTTGTAAATT TGGACAGCTC AATCTAGAGG
  TAGTTTAAAC TGGCTTTGAT TTCCATTTTA GGGAGGAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50736049	NES13577678	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	C	C	T	C		T	T		T
ss146282460	ENSMUSSNP3038532	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss325779929	CHEV_19_25375408	CHEVERUD	SCREENING_POP	f	SNP												C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36889883					SNP	T	C	C	T	C	T	C	C	C	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50736049	NES13577678	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:25278282 () rs orientation: forward

Symbol	Name	Function Class
Kank1	KN motif and ankyrin repeat domains 1	within coordinates
Rr364353	regulatory region 364353	within coordinates
Tssr155675	transcription start site region 155675	336 bp downstream
Tssr155676	transcription start site region 155676	326 bp downstream