rs3688997 SNP Detail

Summary

• ID
  rs3688997
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101047661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTG CCTTTCATGT TAGAAAGTAA
  S
  TTTTTACCAG TGGTAACTTA TTTGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss5065090	WI_WGS_12_95261658	WI	MOUSE	f	SNP					G		C
ss39036721	mCV23331989	ABI	CRAMUS_MOUSE	f	SNP		G	C				C		G
ss47239337	NES11408763	PERLEGEN	MM_PANEL2	f	SNP	G			G		G		C	G	G	G		C	G	C		G
ss137998134	ENSMUSSNP4258855	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						G
ss324139379	CHEV_12_102319612	CHEVERUD	SCREENING_POP	f	SNP												C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3688997					SNP	G	G	C	G	G	G	C	C	G	G	G	C	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47239337	NES11408763	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101047661 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4995	CpG island 4995	1033 bp proximal
D130020L05Rik	RIKEN cDNA D130020L05 gene	1049 bp upstream
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	within coordinates
Rr254052	regulatory region 254052	1261 bp distal
Rr264939	regulatory region 264939	within coordinates
Rr387703	regulatory region 387703	810 bp upstream
Tssr114723	transcription start site region 114723	1537 bp upstream