rs36890264 SNP Detail

Summary

• ID
  rs36890264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:35355598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGCCATC TTTTAACCTG
  GGAATACTTC CTCTGCATTA TTTCTCACAC CCTGTATTCT CTTCCTAACT GCTTTGTCTT
  AGAACAATCG GCCCTTTTGC TTTATTCAGT TGTAATAATT GTACTAGTTT TGTTTCATAT
  GATGCCGCTG ATTCCCAGCA TCTGATAAGA GATCTCATCA GAGGCTTGAG AGCAGATGTT
  Y
  AGAAGGAAAA GTGGGACAGG AGACACAGAA ACTGGCTCTT TATCAGTCGC GTTTGACTGT
  TGCCAAGAAA TCGGACAGAA ACAACTGAAG GCAGGAAGGA CTTCTTCAGC TCACTGTGAA
  AGAGCTTCGG TCTCTATTGA CAGGGCTGGG GGAGGCATGG CAGAGGGCCC TGTTCATGGC
  AGTGGGAACA TCGGGGGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51091129	NES14361626	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36890264					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51091129	NES14361626	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:35355598 () rs orientation: forward

Symbol	Name	Function Class
Rr275746	regulatory region 275746	3 bp proximal
Rr275747	regulatory region 275747	1003 bp proximal