rs36891235 SNP Detail

Summary

• ID
  rs36891235
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59680443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCCTTG TCTGTGATAA
  CCAGGGTCTT ACTTTACTTT TTAAAGTCAC AGCCCATACT AAATTTTTCT CAAACAGAAA
  GGGTGATTAG TCATACTTGA GTATGAGTTG GTGATCACAG TTTGTATTAC TGTTACTGGT
  CCATAAACCC ACTGACTTAA TTTTCCTGTT TTCAAAAGAA TTAAGAAACA GTTTGGTAAA
  R
  GGAAGTGTGT TTATTTCTAG ATTAGCTGAT AGCAGTGGTG GGAGAACAGT CTAAATTCCT
  CCTTGCTATG CCAGTGGTCT TCTTAATTTG CAGAAAGGTT TGGGATAAAG GTTAGAGCAT
  GTGAAAATTG AGGTATAAGA CAGGTCTTTA AAATGTTAAG ATTTCATTGA TGACTGTCAC
  CAAAAGCATT GGTCATTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51516737	NES14634585	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	G		A	G	G	G		G
ss324646631	CHEV_14_60061831	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36891235					SNP	G	G	A	G	G	G	G	G	G	G	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51516737	NES14634585	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59680443 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	within coordinates
Cpgi6560	CpG island 6560	1663 bp distal
Rr404137	regulatory region 404137	1936 bp downstream
Rr493051	regulatory region 493051	1228 bp distal
Tssr125904	transcription start site region 125904	1998 bp downstream
Tssr129009	transcription start site region 129009	1897 bp upstream
Tssr129010	transcription start site region 129010	1886 bp upstream
Tssr129011	transcription start site region 129011	1687 bp upstream
Tssr129012	transcription start site region 129012	1684 bp upstream
Tssr129013	transcription start site region 129013	1677 bp upstream