rs3689149 SNP Detail

Summary

• ID
  rs3689149
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135280536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTG AGAGAGAGCT AATGAACATG
  W
  TTTTCCGATC TGTGGCCTCC CCAGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss5065245	WI_WGS_1_136221257	WI	MOUSE	f	SNP	A		T
ss45179002	mCV23631398	ABI	CRAMUS_MOUSE	f	SNP		A	T	T
ss145531690	ENSMUSSNP5628321	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs3689149					SNP	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135280536 () rs orientation: forward

Symbol	Name	Function Class
Gm56137	predicted gene, 56137	919 bp downstream
Lmod1	leiomodin 1 (smooth muscle)	within coordinates
Rr35730	regulatory region 35730	526 bp distal