rs3689167 SNP Detail

Summary

• ID
  rs3689167
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36392844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA CACCAGCCAG CCCTAGCTCC
  W
  GGTCCTGGAA TGATGGCATT CAGGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss5065263	WI_WGS_7_27208482	WI	MOUSE	f	SNP	T			A
ss148848828	ENSMUSSNP7073545	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
ss322166698	CHEV_7_37478438	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs3689167					SNP	T	A	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36392844 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18883	CpG island 18883	879 bp proximal
Cpgi18884	CpG island 18884	1758 bp proximal
Gm36722	predicted gene, 36722	within coordinates
Rr645552	regulatory region 645552	567 bp distal
Rr645553	regulatory region 645553	within coordinates
Rr645554	regulatory region 645554	771 bp proximal