rs3689172 SNP Detail

Summary

• ID
  rs3689172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135280543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA GCTAATGAAC ATGTTTTTCC
  R
  ATCTGTGGCC TCCCCAGGCA CAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5065268	WI_WGS_1_136221264	WI	MOUSE	f	SNP	A					G
ss45114741	mCV23631397	ABI	CRAMUS_MOUSE	f	SNP		A				G		A
ss51380340	NES14468612	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A		G	A	A	A		G	A	A	G		A
ss145531692	ENSMUSSNP4316928	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss319989345	CHEV_1_137249382	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3689172					SNP	A	A	A	G	A	G	G	A	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51380340	NES14468612	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135280543 () rs orientation: forward

Symbol	Name	Function Class
Gm56137	predicted gene, 56137	912 bp downstream
Lmod1	leiomodin 1 (smooth muscle)	within coordinates
Rr35730	regulatory region 35730	533 bp distal