rs3689198 SNP Detail

Summary

• ID
  rs3689198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149416133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTTCCTT GCTGTAGGAT
  CGCTGCACAC AAGGAAGGTC ACGTAAGATG AGAATACACT TGAGAAGAAA ACACATCAGA
  AACGGCCAAG TGCAGTCTGC GAGATCCTTG GCTCCTAATG ACTGTGACCA TACATTCTGC
  ATCCCATCTT CTCCTATACA CTGTACCGTG GGCAAGGGGG CACTGGATAT AGTTACAGAC
  R
  TCTGCACAGA GACAGACTCA CGTGTGCCAA GGTCACCTGT GGAGAAAGCT CCAGGACCCA
  GAGAAACCGG AAGTTTTTAA CTTTAGGAGC TAGCAAGCAT TTGTTATAAA GAGGAGATTG
  AGGTTATTTG TTTGTGTCAG CCACTGTGTC CTGGGAGCAC ATGACTAAAT TCTGCTTTTT
  TACATAAGGG TGAGCACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss5065294	WI_WGS_4_144716709	WI	MOUSE	f	SNP	G						A
ss46702656	NES10938126	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A		A	A	G
ss148031365	ENSMUSSNP6341648	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs3689198					SNP	G	G	A	A	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46702656	NES10938126	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149416133 () rs orientation: forward

Symbol	Name	Function Class
Rr604892	regulatory region 604892	974 bp distal
Ube4b	ubiquitination factor E4B	within coordinates