rs36892070 SNP Detail

Summary

• ID
  rs36892070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:5652632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAACGGTCC CGGGTCCAGA TGCCAAAGTG CATAGGGCCC
  TAGGTTGGCC CAGCCTCGCA GCAGCGGTAC GTATACTCAG GAGCCCTTTT CCTCCTCAGA
  Y
  TTGGTCAGTC CTTCTATCCG ATTTGAATAG TGTCTCTAGT GATTTGGGGG CTTTAGGGCA
  ATAAACACCA CGGGGATCAT GGCTCCGGAG GCCCAAACTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss50578378	NES13651104	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs36892070					SNP	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578378	NES13651104	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5652632 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kat5	K(lysine) acetyltransferase 5			410 bp downstream
Rnaseh2c	ribonuclease H2, subunit C			Coding-NonSynonymous
				Intron
Rr370434	regulatory region 370434			645 bp downstream
Rr543090	regulatory region 543090			721 bp distal
Tssr154457	transcription start site region 154457			752 bp downstream
Tssr154458	transcription start site region 154458			688 bp downstream