rs36892620 SNP Detail

Summary

• ID
  rs36892620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61329003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAAAATG GCTTGTTTTT
  TGATGCTGGT GGTAAATTAG GCTTTGGTTC TAAATTTGAT TCCTTCAAAT ATCAGCAATC
  AAAATCAGTT TTAATGTTCG ATTTAGGAAG AGATCAACCC TAAGAGAAAG GCAGCAGCAG
  ACTCCAGCGC AATCGCATTT TAAAATGGCT ACTGAAAAGT AGGCTCCTGT TCGCTTCTGT
  R
  GGACAAACAC AAATCAGAAG AGAACTCGAA GATTAGCTAA CGCGTATGTA AAGCTCCTGA
  ACCAGTTAGG TCCACACTGT GACCTTACAG TCAGTCAGAG GGCAGAGACT TTCCAAACAC
  TCAGCTAAAA TTCTTTTTCT ACTCTGGTGT TGAATGGATT ATACAGTTAT CTTAAACAAG
  TGCTTTAGAA AGAGAGGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50413746	NES13453120	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36892620					SNP	G	G	G	G	G	A	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50413746	NES13453120	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61329003 () rs orientation: forward

Symbol	Name	Function Class
Rr354846	regulatory region 354846	1804 bp distal
Rr356345	regulatory region 356345	921 bp distal
Slc26a2	solute carrier family 26 (sulfate transporter), member 2	923 bp downstream
Tssr153542	transcription start site region 153542	267 bp downstream
Tssr153543	transcription start site region 153543	433 bp downstream
Tssr153544	transcription start site region 153544	615 bp downstream
Tssr153545	transcription start site region 153545	1774 bp downstream