rs3689345 SNP Detail

Summary

• ID
  rs3689345
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:147163848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG AGCAGCCCTA GACGGTATTA
  S
  ATCGACATCG ATGAGACAGA CAGAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5065443	WI_WGS_6_147984636	WI	MOUSE	f	SNP	G		C
ss134013062	ENSMUSSNP2889798	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		C
ss322086690	CHEV_6_147210872	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3689345					SNP	G	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:147163848 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18178	CpG island 18178	827 bp proximal
Pthlh	parathyroid hormone-like peptide	within coordinates
Rr145960	regulatory region 145960	within coordinates
Tssr59618	transcription start site region 59618	1748 bp upstream
Tssr64140	transcription start site region 64140	1508 bp downstream
Tssr64141	transcription start site region 64141	1583 bp downstream
Tssr64142	transcription start site region 64142	1613 bp downstream
Tssr64143	transcription start site region 64143	1632 bp downstream
Tssr64144	transcription start site region 64144	1774 bp downstream