rs36894478 SNP Detail

Summary

• ID
  rs36894478
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:86411698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCTTTCC AGCTTTCCCG
  TTTTTTTCAG GCTCATAGCT CCTCTTACAG GCCTGACTTC AAAAGAAATT GGCTTGCTGG
  AGAAGAAATA GTACTCTCTC CTGTGATTCA TAATCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCC CCCTCTTTCC TTCTTCCTCT TCCTCTATGC CAAATTCTCT
  M
  ACTCTCTTTT CTCCTTACCT AGTCTATAAG GGCTGTTATG TTCCTTTACT CCACCATTCA
  AGACTTGCAG TCCTGAATAT CCAGGAACTA GACGCTTGAA TTTCAGTGTT GATCCCCTCG
  TAGACTAGAG TCACCCATTC TGCACCATGC GTGCCTCATG CCACCCTCTC CAGCTCCAAT
  ATGGGAACCG GTGGACCTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50559680	NES13670037	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	C	A		C	A	C
ss147658574	ENSMUSSNP3599342	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36894478					SNP	C	C	C	C	C	C	C	C	C	C	C	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50559680	NES13670037	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:86411698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10352	CpG island 10352	478 bp proximal
Cpgi10353	CpG island 10353	1228 bp proximal
Gm54041	predicted gene, 54041	within coordinates
Neto1	neuropilin (NRP) and tolloid (TLL)-like 1	1379 bp upstream
Rr542239	regulatory region 542239	within coordinates
Rr542240	regulatory region 542240	205 bp proximal
Rr542241	regulatory region 542241	889 bp proximal
Rr542242	regulatory region 542242	1469 bp proximal
Tg(Ddx4-cre)1Dcas	transgene insertion 1, Diego H Castrillon	within coordinates
Tssr152242	transcription start site region 152242	1199 bp upstream
Tssr152243	transcription start site region 152243	1220 bp upstream
Tssr152244	transcription start site region 152244	1237 bp upstream
Tssr152245	transcription start site region 152245	1345 bp upstream
Tssr152246	transcription start site region 152246	1379 bp upstream
Tssr152247	transcription start site region 152247	1429 bp upstream
Tssr152248	transcription start site region 152248	1611 bp upstream
Tssr152249	transcription start site region 152249	1702 bp upstream
Tssr152250	transcription start site region 152250	1973 bp upstream