rs3689463 SNP Detail

Summary

• ID
  rs3689463
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52030163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGCCCC CAGGAATCTA
  TGGGGGTGAC TTTAGCTGAG AATCCAAGCA ATGGGCATAT GGAACCTAAA GAAACTACCT
  CCTGTAGACA GGGAGGATAT CCAGTGGAAG GATAAGAACA CCAACCCACC CACAAAACCT
  GTCATGTCTA CAAGAAATGA CTCAAAACTT GTCATGTCTA CAAGAAATTT AGGGACAAAG
  W
  TGGAGCAGAG ACTGAGAGAA TGACCAAACA CTAACTGGTC CAACTTGAGA CCCATTCCAT
  GGGCAAGCAC CAATCCCTGA CACTAGTAAT GATGCTCTGT TATGTATGCA GACAAGAGCC
  TAGCATAATT GTCCTATGAG AGGACTGAAA AGACACAGAT ATGCACAGCC AAACACTAAA
  TGGATCAGAG AGTCTTATGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
ss5065563	WI_WGS_12_46423078	WI	MOUSE	f	SNP			A	T
ss137728946	ENSMUSSNP2131826	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
rs3689463					SNP	A	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52030163 () rs orientation: forward

Symbol	Name	Function Class
Gm60186	predicted gene, 60186	1946 bp downstream
Rr387211	regulatory region 387211	within coordinates