rs36895428 SNP Detail

Summary

• ID
  rs36895428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9963103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCCCTTC CACTTACGAA
  AAAGATGTTC TGGACACAGA TGAAACTGGG AATATGGAAG TGGGAAGTTA ACACTCAGGA
  TGTGTGATCA AGGTGAGAGG TGTGGAATGT TTGTTAATTG GGCAAAGGTG TCCCAAGAAA
  TGTAAAAGAG AAATGACATT AGGCTTGTGG GTTATGCTTT TTGGAAGTAT TAAGCAAGGC
  Y
  TCAGACCCAA GAAGGTATCC CAGAAGACCG TGGCCAATGC CTGAAGTGAG GTGGGAAGAG
  CTCAGGTAAA GACAAGTGTT CATTTGCCAT CTAACAAATA GTGAGGCTGG CCCTTGAGCT
  ACACTAGCTA GAGTCTCAGT TCTGTCTCAA GGCTACCTGC AAGAGGCTAG CCAACCATCC
  CTGCAAGAAC CACCTCATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50605182	NES13645686	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36895428					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605182	NES13645686	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9963103 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	within coordinates
Fth1	ferritin heavy polypeptide 1	641 bp downstream
Rr543966	regulatory region 543966	1737 bp distal
Rr543967	regulatory region 543967	1157 bp distal
Rr543968	regulatory region 543968	1558 bp proximal
Tssr155006	transcription start site region 155006	1520 bp downstream
Tssr155007	transcription start site region 155007	1447 bp downstream
Tssr155008	transcription start site region 155008	1156 bp downstream
Tssr155009	transcription start site region 155009	810 bp downstream
Tssr155010	transcription start site region 155010	622 bp downstream
Tssr158137	transcription start site region 158137	1502 bp upstream
Tssr158138	transcription start site region 158138	1413 bp upstream
Tssr158139	transcription start site region 158139	1120 bp upstream
Tssr158140	transcription start site region 158140	899 bp upstream
Tssr158141	transcription start site region 158141	871 bp upstream
Tssr158142	transcription start site region 158142	846 bp upstream
Tssr158143	transcription start site region 158143	780 bp upstream
Tssr158144	transcription start site region 158144	642 bp upstream