rs3689602 SNP Detail

Summary

• ID
  rs3689602
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30302848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACCCTCC AGCCCAGGCG
  CTATCCCAAA GCAGGCCATA TTGCGGCTCC CTTTTCCTCT GCCCTTCCTC TGACAGACAC
  TGCCATTCAT AGCTCTGCCT TTCCCCTCAG CCCTGAGAGT GGAACCCAGA GTCTCATACA
  TGCTAGGCAA AAGTTCTACC TCAGAGGCCC AGTCCCAGCC AGTAGCTCCT TTTCAAAAAT
  K
  TCCATGTAAT TCTTCTGCTG AGCATGACCT CACCTGCTGA TGCACCACCC TGGTTCCCAG
  CCTTCTCCCC ATGCCCCTAA CTAAGTATCA GCTCTGGGGG ACCCACGGCC CCCAGGCAAC
  TGTCAGGCTG CTGCCACCTC ACTTACCCAG TTCTCCATTT TCTTGGCCCT GCGCTCCAGT
  CCCTTCTGTA GGCGTTCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss5065703	WI_WGS_2_30755750	WI	MOUSE	f	SNP					T				G
ss16373690	02.030.687	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	G	G	T	G	G	T		G	G	T	T	G	G	T	G	G	T	G	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	G	G	G	T	T	T	G	T	G	G	G
ss45215826	mCV23383213	ABI	CRAMUS_MOUSE	f	SNP	T	T	G						G											G
ss146398610	ENSMUSSNP3239110	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G																	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs3689602					SNP	T	T	G	G	T	G	G	T	G	G	G	T	T	G	G	T	G	G	T	G	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	G	G	G	T	T	T	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30302848 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Crat	carnitine acetyltransferase			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm16323	predicted gene 16323			880 bp upstream
Rr554310	regulatory region 554310			790 bp proximal
Rr554311	regulatory region 554311			891 bp proximal
Rr554312	regulatory region 554312			1848 bp proximal
Tssr23368	transcription start site region 23368			434 bp downstream
Tssr23369	transcription start site region 23369			1268 bp downstream
Tssr23370	transcription start site region 23370			1333 bp downstream