rs3689615 SNP Detail

Summary

• ID
  rs3689615
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136806542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAG GGAATTTTTG ACATCAAGTA
  Y
  TTTGAAAGAA CTGATTGAGG TGTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5065716	WI_WGS_6_137196117	WI	MOUSE	f	SNP	T			C
ss133848607	ENSMUSSNP5736253	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss321998866	CHEV_6_136778065	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3689615					SNP	T	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136806542 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	within coordinates
Cpgi18110	CpG island 18110	1121 bp distal
Rr380176	regulatory region 380176	177 bp downstream
Rr640072	regulatory region 640072	1322 bp distal
Rr640073	regulatory region 640073	691 bp distal
Rr640074	regulatory region 640074	402 bp distal
Smco3	single-pass membrane protein with coiled-coil domains 3	387 bp downstream
Tssr2044	transcription start site region 2044	1064 bp downstream
Tssr59337	transcription start site region 59337	1784 bp downstream
Tssr59338	transcription start site region 59338	1746 bp downstream
Tssr59339	transcription start site region 59339	1733 bp downstream
Tssr59340	transcription start site region 59340	1705 bp downstream
Tssr59341	transcription start site region 59341	1088 bp downstream
Tssr59342	transcription start site region 59342	719 bp downstream
Tssr63836	transcription start site region 63836	1800 bp upstream
Tssr63837	transcription start site region 63837	1783 bp upstream
Tssr63838	transcription start site region 63838	1775 bp upstream
Tssr63839	transcription start site region 63839	1719 bp upstream
Tssr63840	transcription start site region 63840	1482 bp upstream
Tssr63841	transcription start site region 63841	1365 bp upstream
Tssr63842	transcription start site region 63842	1347 bp upstream
Wbp11	WW domain binding protein 11	1328 bp upstream