rs36897095 SNP Detail

Summary

• ID
  rs36897095
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58664417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCAATCT TCCAGAACAT
  TCTTTCCCCT AGTTTACAAT TGGTCACCAC AGCCTGCTCT GCCAGGTGTC GTACTATGCC
  AGGCTGTGGA CTCAGTCACA GAAAGCACCT GCCTCCCTGG AAGACTAGAA TCTGATAGAA
  ATCTCTAACC TGAAGAGCCT TTAGCTCATC ATCTTCTGGG GTCAGCCGTT TGGAGGGAAC
  Y
  GCTGCTAAGA AGCAATATTC TCGAGGGAGC TAGACGTCCG TGAGCAGTGT CTTGTACCGA
  CCGCTCTCCA GGCACACCTT ACAATAGTGC CCGACAGTTG ACGAAACAGC CACACATCCC
  GATACTTGAC GAAGCATTCA CACATCCCGA TACTTGACGA AGTATTCACA CATTGATGTA
  ACCGTTGTAC TGGTGACGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss50904007	NES13492687	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs36897095					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50904007	NES13492687	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58664417 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	within coordinates
Pnlip	pancreatic lipase	within coordinates
Tssr157271	transcription start site region 157271	920 bp downstream
Tssr157272	transcription start site region 157272	904 bp downstream
Tssr157273	transcription start site region 157273	213 bp upstream
Tssr157274	transcription start site region 157274	245 bp upstream
Tssr157275	transcription start site region 157275	265 bp upstream
Tssr157276	transcription start site region 157276	288 bp upstream
Tssr157277	transcription start site region 157277	529 bp upstream
Tssr157278	transcription start site region 157278	1151 bp upstream
Tssr157279	transcription start site region 157279	1168 bp upstream
Tssr157280	transcription start site region 157280	1184 bp upstream
Tssr159961	transcription start site region 159961	815 bp upstream