rs36897616 SNP Detail

Summary

• ID
  rs36897616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:18707454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTCAAGA CCTCTGATTT
  GCTTTCCATG TAGGCAAATC AGGGGTCAGG AGTACATTGT GAAACATTTT ACTTCTCCTA
  TGTTTTGACA CACTTGTAGA CATCAGTCTC TTTGAGAACA AATTAATAAT GGGAAATGAT
  TTTGTTCTGT GCTTACAACG TATCAGGCAC TGTGAGAATG ACTAACTACA TGGATGAAGA
  Y
  GATGATTCAT GTATGTGTGC GTGTTACACT CACACACACA CACACACACA CACACACACA
  CACACACATG AGTAATTATA TTTTCTCCCC ACTTCTTCCA ACCTACCTCT AGCTAAGCCA
  AAAAGAGGAA CGGCTGATGA ATCTGTGAGG ACTTGCTGCA TTGCAGGCCT TTATGGAGTG
  TTTGAAGCTC ACACAGCGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50685057	NES13607279	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36897616					SNP	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50685057	NES13607279	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:18707454 () rs orientation: forward

Symbol	Name	Function Class
Gm50202	predicted gene, 50202	1783 bp downstream
Gm59201	predicted gene, 59201	261 bp downstream
Tssr155454	transcription start site region 155454	522 bp upstream
Tssr155455	transcription start site region 155455	540 bp upstream
Tssr155456	transcription start site region 155456	568 bp upstream
Tssr155457	transcription start site region 155457	1339 bp upstream