rs3689771 SNP Detail

Summary

• ID
  rs3689771
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54567903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGG ACTTTGAAAA CCAGCAGACG
  S
  TATTCTTCAT TTTTGAGAGC TGAAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5065875	WI_WGS_9_55191410	WI	MOUSE	f	SNP	G						C
ss46407188	mCV24161035	ABI	CRAMUS_MOUSE	f	SNP		G	C				C	G
ss52018249	NES15041873	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C			C	G		C	C	C		G
ss136506905	ENSMUSSNP5794362	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C					G
ss322965575	CHEV_9_54508426	CHEVERUD	SCREENING_POP	f	SNP											C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3689771					SNP	?	G	C	C	C	C	C	G	C	G	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52018249	NES15041873	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54567903 () rs orientation: forward

Symbol	Name	Function Class
Acsbg1	acyl-CoA synthetase bubblegum family member 1	within coordinates
Rr206444	regulatory region 206444	697 bp proximal
Tssr89653	transcription start site region 89653	1047 bp downstream
Tssr89654	transcription start site region 89654	1225 bp downstream
Tssr89655	transcription start site region 89655	1265 bp downstream