rs36897710 SNP Detail

Summary

• ID
  rs36897710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:18707607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAACGTAT CAGGCACTGT
  GAGAATGACT AACTACATGG ATGAAGACGA TGATTCATGT ATGTGTGCGT GTTACACTCA
  CACACACACA CACACACACA CACACACACA CACACATGAG TAATTATATT TTCTCCCCAC
  TTCTTCCAAC CTACCTCTAG CTAAGCCAAA AAGAGGAACG GCTGATGAAT CTGTGAGGAC
  Y
  TGCTGCATTG CAGGCCTTTA TGGAGTGTTT GAAGCTCACA CAGCGAGAGC CCTTGCTACA
  GGAGTGAACG ATGCCATGGA TGGACGAGGA GAGAGAGGCT AGATGTATTC ATTTACCTGT
  TCAGCAGCGC TCAGGTCATT GTCTTACTTG GGAGGGTGGG GAGGAACGAG GCTAGGAAGA
  TCCCTTTGCA TTCTTAGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50685055	NES13607287	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36897710					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50685055	NES13607287	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:18707607 () rs orientation: forward

Symbol	Name	Function Class
Gm50202	predicted gene, 50202	1630 bp downstream
Gm59201	predicted gene, 59201	108 bp downstream
Tssr155454	transcription start site region 155454	369 bp upstream
Tssr155455	transcription start site region 155455	387 bp upstream
Tssr155456	transcription start site region 155456	415 bp upstream
Tssr155457	transcription start site region 155457	1186 bp upstream