rs36897724 SNP Detail

Summary

• ID
  rs36897724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136803544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCACTCT GTAGACCAGG
  CTGGCCTCGA ACTCAGAAAT CCGCCTGCCT CTGCCTCCCA AGTGCTGGGA TTAAAGGCGT
  GCGCCACCAC GCCCGGCTTT CTTTACCTTT CTTGACCACA AAGAAAAGGC TAGTATCTGT
  ACTAGTCAAC ACAGTGAGAA TATCATTAAC TACTCAAAAG TTTAACCCTT TCCTATGGAT
  Y
  ATATAGTGCT GTTAACTGAA TAAAGAAATC AACAAGAACT TTGCACTTAT AATGCTATTG
  TTTGGAATAT AGACTGAGCC ATATGAGACG ATCTCAAAAC AAACCAAAAC CAATTGAGAA
  ATATTCTAAC AATGCAATGC AAACCCTGAG GACATCTTTC CGACCTGTAT AAGGGGATAT
  GAAACAGGAG TGGAGATAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss51454449	NES13991525	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	C		T	T	C
ss321998851	CHEV_6_136775067	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs36897724					SNP	T	T	T	C	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51454449	NES13991525	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136803544 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	1080 bp upstream
Cpgi18110	CpG island 18110	1023 bp proximal
Rr380176	regulatory region 380176	478 bp upstream
Rr640072	regulatory region 640072	737 bp proximal
Rr640073	regulatory region 640073	1677 bp proximal
Tssr2044	transcription start site region 2044	1911 bp upstream
Tssr59337	transcription start site region 59337	1199 bp upstream
Tssr59338	transcription start site region 59338	1215 bp upstream
Tssr59339	transcription start site region 59339	1253 bp upstream
Tssr59340	transcription start site region 59340	1284 bp upstream
Tssr59341	transcription start site region 59341	1868 bp upstream
Tssr63834	transcription start site region 63834	513 bp upstream
Tssr63835	transcription start site region 63835	450 bp upstream
Tssr63836	transcription start site region 63836	1168 bp downstream
Tssr63837	transcription start site region 63837	1201 bp downstream
Tssr63838	transcription start site region 63838	1220 bp downstream
Tssr63839	transcription start site region 63839	1274 bp downstream
Tssr63840	transcription start site region 63840	1505 bp downstream
Tssr63841	transcription start site region 63841	1578 bp downstream
Tssr63842	transcription start site region 63842	1640 bp downstream
Wbp11	WW domain binding protein 11	within coordinates