rs36899956 SNP Detail

Summary

• ID
  rs36899956
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86414414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTGTGAT TAAAGGCGTG
  TGCCACCACG GCCCGGCTTT TTGTTTTGTT TTGTTTGTTT TTATCTGCTT TTTTTGTTTT
  GTTTTGTTTT TTGTTTTTTT TTAAATGTCA GTTGAAAATT GCAGCCTGGG AGAGCTTGGT
  GTGAGGACAC CCAAGTTGGC TGGTTCTGAA GACAGGGAGG TGAGGATCAC AAGGTCTTTC
  R
  TGAACCACTG CACACTTAAT GAGAAAGGAG AGAAACAGCA TCCAGAAAGA TGTTGTCTGC
  ATGTCTCTCT ATTGGAGGGC TTGACATTGA ACTATAGAAC AAAGGAGAAA CACTTCCCAA
  TGCCAGGCAA AGAAATGAGG GTTGATGCTC TCTGGTCACC ACTTGAGGCA GTTGCTAGGA
  ACTAACTAGC CATGTGATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51753283	NES14806732	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36899956					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51753283	NES14806732	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86414414 () rs orientation: forward

Symbol	Name	Function Class
C87436	expressed sequence C87436	942 bp upstream
Cpgi17664	CpG island 17664	658 bp proximal
Gm44790	predicted gene 44790	within coordinates
Gm66311	predicted gene, 66311	51 bp downstream
Rr368111	regulatory region 368111	1082 bp upstream
Rr399735	regulatory region 399735	755 bp upstream
Tssr57468	transcription start site region 57468	928 bp upstream
Tssr57469	transcription start site region 57469	983 bp upstream
Tssr57470	transcription start site region 57470	1234 bp upstream
Tssr57471	transcription start site region 57471	1282 bp upstream
Tssr57472	transcription start site region 57472	1316 bp upstream
Tssr61792	transcription start site region 61792	1186 bp downstream