rs36900380 SNP Detail

Summary

• ID
  rs36900380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61329831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGCACAT TTTCTACCCT
  GAAGCTTTTA CTGGAAACAT GGAAAGCTAT TTCCCACACA GGCAAGCAGG CGTGCTCTGT
  CACTAGGAGA ACCACAGGGG CAGCTCCTGG AGTTCGCACG TGTAAAATGT CTGAAAGCAT
  TCCACCTCAC TAGGTTCCTT ACACAGAGTG CTTCCCATAA ATATTTTAAA TTGTTTTGCA
  Y
  GTAAGAACAG GCTAAAAATG ATTTTACACT TCAGAAACTG TTACTTTAAT AACTTGGCTA
  AATGTTTTAA TCTCATGTGA GTCCTCTATT CCGCACTTGG GAGAACTTTT CTTACCTGTT
  GAAGTCCTTT TCTGAAGAAA CTACTCAACT CCTAACCTGC AGCCAGCTCC TGAGAATGAC
  ACCCCAGTAC ATCTAGGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50413738	NES13453081	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36900380					SNP	C	C	C	C	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50413738	NES13453081	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61329831 () rs orientation: forward

Symbol	Name	Function Class
Rr356345	regulatory region 356345	1749 bp distal
Slc26a2	solute carrier family 26 (sulfate transporter), member 2	95 bp downstream
Tssr153542	transcription start site region 153542	528 bp upstream
Tssr153543	transcription start site region 153543	361 bp upstream
Tssr153544	transcription start site region 153544	202 bp upstream
Tssr153545	transcription start site region 153545	946 bp downstream