rs36901518 SNP Detail

Summary

• ID
  rs36901518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27837396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACACACA GTAGTGAACA
  GGATAGACCA CAGTGATTGA GGTTGCCACA AGAGGGCACT CTAGCATATC TGGAGATTAG
  TTGGAGAGGG ATGCAGGATA AGACACTAGG GGAATTCAAG AGGGATAAAG GATGCTAGAG
  GGCGAGTAGG GGACAGTTAC AGAGAAGATT TTCCTAGAAT AAAATTTTCA AATCTAAAAT
  Y
  CATGGGAAGG ACTGGAATAT CCAAAAAGGG GAAAACGGAT GTGGGCTCCT TCCTGACCCA
  GGGAACCACA GAGGTTTGTC ACGAAAGATA GTCTGTCAAG TTGCAAGATC AAATTCAGTG
  ATTATTCTTT GGTTGTAACA CTCCCATGAC TCCCAATGCC CTCTGAAAAA TATCAAAGAC
  GACTAGCCAG GCGCCCATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51887442	NES14907468	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36901518					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887442	NES14907468	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27837396 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	51 bp distal
Rr644171	regulatory region 644171	138 bp distal
Tssr65386	transcription start site region 65386	860 bp downstream
Tssr65387	transcription start site region 65387	527 bp downstream
Tssr65388	transcription start site region 65388	429 bp downstream
Tssr65389	transcription start site region 65389	375 bp downstream
Tssr65390	transcription start site region 65390	1751 bp upstream
Tssr65391	transcription start site region 65391	1782 bp upstream
Tssr65392	transcription start site region 65392	1804 bp upstream
Tssr65393	transcription start site region 65393	1942 bp upstream
Tssr65394	transcription start site region 65394	1991 bp upstream
Tssr71448	transcription start site region 71448	864 bp upstream
Tssr71449	transcription start site region 71449	851 bp upstream
Tssr71450	transcription start site region 71450	839 bp upstream
Tssr71451	transcription start site region 71451	432 bp upstream
Tssr71452	transcription start site region 71452	1795 bp downstream
Tssr71453	transcription start site region 71453	1818 bp downstream
Tssr71454	transcription start site region 71454	1845 bp downstream