rs36901857 SNP Detail

Summary

• ID
  rs36901857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48590650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCAGGTCT GGAGAATGAG
  CTCTCTGGGT AGGATGCTGG CTTAGAGATG CTGGGGTTTA GTGAATCCAG AGTTCTGGTC
  CCAGGGTCAC TCGGAGTTCA AGGTCTTCAT CTCTCTGCAG GCTGCTATGA TGACAAAAGC
  AGGCAGCCTG GGGATCCCCA GGCACATGCT GCCTGGAGTG GAAAAAATTT CCTACCTGGT
  Y
  ATGTGCTCTT GTTAGGAGCC CTCTGCAGGC CAGCAGCAGC CCTCTCCTGC GAATGGCCCT
  CTCATCCCTT AGTAGCAGTC CTGTCATGGC AACAGAGAGC ATCATTTTGT CATAATGAAC
  AGGGACAAGT ACCTATAGAC CAGAGGCTTT TATCACATCT GAGCCCAAGG CAATGGGCCT
  CTGGGCAGGC TGAGGTTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51306567	NES13769685	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	C	C		C	T	C	C		T
ss133165054	ENSMUSSNP2331117	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss321794035	CHEV_6_48563715	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36901857					SNP	C	C	T	C	C	C	C	C	C	C	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51306567	NES13769685	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48590650 () rs orientation: forward

Symbol	Name	Function Class
Gm38804	predicted gene, 38804	within coordinates
Gm44965	predicted gene 44965	within coordinates
Gm45021	predicted gene 45021	466 bp downstream
Gm67224	predicted gene, 67224	within coordinates
Rr135555	regulatory region 135555	within coordinates
Tssr60741	transcription start site region 60741	22 bp downstream
Tssr60742	transcription start site region 60742	33 bp downstream
Zfp775	zinc finger protein 775	within coordinates