rs36902050 SNP Detail

Summary

• ID
  rs36902050
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:25276240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTTATCTCT GGAGGGCCTT CCCTGACTGC AGCTCAGATG
  CTGCTGCTGA AGAGGGATCC TAGGAATGCG CCTTCCAAGT AAGTCCTCTA GGTTTAGGAC
  M
  GTCTGCTTAT TATGTATATT TATTTGTTGA TGTTTCAAAA AATGTATGAA ACTCAATGCA
  GTCATATTTG TGCATGCTTT CCTAAAAATG GTCCATTAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50736063	NES13577728	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	C	C	A	C	A		C	C		C
ss146282420	ENSMUSSNP2799693	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss325779918	CHEV_19_25373366	CHEVERUD	SCREENING_POP	f	SNP											A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36902050					SNP	C	A	A	C	A	C	C	A	C	A	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50736063	NES13577728	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:25276240 () rs orientation: forward

Symbol	Name	Function Class
Kank1	KN motif and ankyrin repeat domains 1	within coordinates
Rr364352	regulatory region 364352	1250 bp distal
Rr364353	regulatory region 364353	1562 bp proximal
Tssr155675	transcription start site region 155675	1694 bp upstream
Tssr155676	transcription start site region 155676	1710 bp upstream