rs36902093 SNP Detail

Summary

• ID
  rs36902093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:63796970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCGGGCCA AGTTCTCTCC
  TGGGGCTCTG GGTACCTGTC TCCATGTCCC TGAGGGGCCT GAGCTCCAGG GCCAAGCTGC
  TCATACACTC CCCTGTCTCC CCCACCCCCA GCCCCAGCTC ACAGGGAGAT AAAGCACCTT
  AGCTTCATTA TTCAGATGGC TAATTGCTAA CTGATTTAAT TAAAGTATTC AGATATTTCC
  Y
  CAAGTTAGTT ACATTTCATA TCGCTCCGTT AGGAGCAATT GGCTGGAATG AGGAGTTGAG
  GAGAGGGCGG GAGAGAGGGA GGCTGGCCAG GTGGGCGGGG ACTGGTGTCC CCTGGTTGGC
  AGAGGCTTGC TCACTATTTG AGGCAGCCTG AGGATTGCCT GACTTTCTCC TAGAGAGCAA
  CTCACCCGCA CTCAGAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50722623	NES14252367	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	C		C	C	C	C		C
ss322984104	CHEV_9_63737495	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36902093					SNP	T	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50722623	NES14252367	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:63796970 () rs orientation: forward

Symbol	Name	Function Class
Rr49	regulatory region 49	within coordinates
Rr959	regulatory region 959	within coordinates
Rr973	regulatory region 973	1030 bp proximal
Rr196462	regulatory region 196462	370 bp distal
Rr196463	regulatory region 196463	1031 bp proximal
Rr201237	regulatory region 201237	within coordinates
Rr201238	regulatory region 201238	831 bp proximal
Rr201239	regulatory region 201239	1430 bp proximal