rs3690314 SNP Detail

Summary

• ID
  rs3690314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51634691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACT CTCTTATGAA TCCTGATGAG
  Y
  CCTATAGTTT GATGAAAAGA ATAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5066426	WI_WGS_1_52154402	WI	MOUSE	f	SNP	T							C
ss45118030	mCV23215643	ABI	CRAMUS_MOUSE	f	SNP		T	T					C
ss47350262	NES11070397	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	C	C	T		T	T	T	C		T	T	T	C		T
ss149111950	ENSMUSSNP5004557	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss319717424	CHEV_1_51652376	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3690314					SNP	T	T	T	C	C	C	T	C	T	T	T	C	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350262	NES11070397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51634691 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	1351 bp downstream
Rr396024	regulatory region 396024	1528 bp upstream
Rr410724	regulatory region 410724	990 bp distal
Rr410725	regulatory region 410725	1360 bp proximal
Rr410726	regulatory region 410726	1646 bp proximal
Tssr6634	transcription start site region 6634	1534 bp downstream
Tssr6635	transcription start site region 6635	1348 bp downstream
Tssr6636	transcription start site region 6636	1281 bp downstream