rs3690330 SNP Detail

Summary

• ID
  rs3690330
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103367168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA CAGCACCACA AAGGACCAAC
  W
  GCACCTGTGG ACAGCCCAGG TGTGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J
ss5066442	WI_WGS_9_104251515	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J
rs3690330					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103367168 () rs orientation: forward

Symbol	Name	Function Class
Gm16252	predicted gene 16252	within coordinates
Rr192235	regulatory region 192235	233 bp proximal
Rr198519	regulatory region 198519	1633 bp proximal
Rr207116	regulatory region 207116	within coordinates
Tmem108	transmembrane protein 108	within coordinates
Tssr91216	transcription start site region 91216	659 bp upstream
Tssr91217	transcription start site region 91217	625 bp upstream
Tssr91218	transcription start site region 91218	593 bp upstream