rs36903529 SNP Detail

Summary

• ID
  rs36903529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10583298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGGCGGCG GGAGCAAAAA CTTGGGCTCC GGGAATGGAA
  GGCGCTGGCA GTCGCGGAAC GTCCCCCTTA GCTCGCGATC TCAAAGGAGC TGTTCCCACC
  R
  CGCGCCTTTT GGGCAGCGGA AGCAGCTATT CTGGGTCCTT TTTTGCTCAT AGGAGGTCAC
  TTGTTATTGA GGATTGGTCC AGGCCTGATG GGACGGAGAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50601260	NES13643018	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36903529					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601260	NES13643018	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10583298 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10615	CpG island 10615	within coordinates
Ddb1	damage specific DNA binding protein 1	within coordinates
Gm59162	predicted gene, 59162	567 bp downstream
Rr362968	regulatory region 362968	within coordinates
Rr405857	regulatory region 405857	278 bp downstream
Tkfc	triokinase, FMN cyclase	280 bp upstream
Tssr155068	transcription start site region 155068	380 bp downstream
Tssr155069	transcription start site region 155069	320 bp downstream
Tssr155070	transcription start site region 155070	290 bp downstream
Tssr155071	transcription start site region 155071	239 bp downstream
Tssr155072	transcription start site region 155072	within coordinates
Tssr155073	transcription start site region 155073	339 bp upstream
Tssr155074	transcription start site region 155074	1858 bp upstream
Tssr158200	transcription start site region 158200	1619 bp upstream
Tssr158201	transcription start site region 158201	1597 bp upstream
Tssr158202	transcription start site region 158202	1567 bp upstream
Tssr158203	transcription start site region 158203	1537 bp upstream
Tssr158204	transcription start site region 158204	529 bp upstream
Tssr158205	transcription start site region 158205	468 bp upstream
Tssr158206	transcription start site region 158206	464 bp upstream
Tssr158207	transcription start site region 158207	19 bp upstream