rs36904206 SNP Detail

Summary

• ID
  rs36904206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:58307576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTTTATC TGGGTTTCCT
  ACTTAAAATT ACATACTAAT CCAATTTCTA ATTATTAAAA TTCTTACCTT AGTAGCTGTC
  TTTCCTTTAT AGAACTGTTT CTAATAAGAA AATTATATTC CTCCATTTTG GTATTTTTAC
  AAGTTATTTA AAAGTTATTA TGGTTTAGAA ATTGAGAGTA TTCTCGGCAT ATTTAACCAA
  Y
  CTGAATATTC TCTAGTGCAT TACTGTTGAC ATGGATAATT ACTAATAAAT AAACCTATTT
  CCACTGTTCA AAAAAACAGG GACTGTGATT TCTAGGAATG TAAAATCAAA ATATAAGATT
  ATAAAATCAT TCTTTGAAAC TATCCTCACT TTTTCTTAAA GGATTTGTAA TAATCTTCAG
  GGAATAGTTC AGGATCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51129234	NES13857135	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36904206					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51129234	NES13857135	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:58307576 () rs orientation: forward

Symbol	Name	Function Class
Gm42976	predicted gene 42976	390 bp upstream