rs36904648 SNP Detail

Summary

• ID
  rs36904648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113417820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATA GACTCTGAAG GTGAGCAGGC
  Y
  CAGGCTGGCA GGCCCCACAG CTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51841495	NES14768265	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C		T	T	C	T		T
ss321910875	CHEV_6_113390853	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36904648					SNP	C	C	C	C	C	C	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51841495	NES14768265	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113417820 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17844	CpG island 17844	1523 bp proximal
Gm43928	predicted gene, 43928	within coordinates
Jagn1	jagunal homolog 1	1710 bp upstream
Rr132170	regulatory region 132170	181 bp proximal
Rr145547	regulatory region 145547	1180 bp proximal
Rr146999	regulatory region 146999	821 bp distal
Rr399832	regulatory region 399832	1485 bp upstream
Tssr58212	transcription start site region 58212	1712 bp upstream
Tssr58213	transcription start site region 58213	1769 bp upstream