rs3690564 SNP Detail

Summary

• ID
  rs3690564
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136494026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCATTTTAA ACCACAGATT CTTCACACAA ATGGCCTGGT
  AGAGTCTTTG CTTCCCTCTG AAACGTCACA AGCTGGGCCA CTGTCGTCTG CACTGCTCTC
  R
  ACATTCTTGT CTCTCTAGTT TCTACGTAAC AGGTCCCTGA GTTCTCCACA CTCCATGGCT
  TTAGTACAAT GTCCTACCAA TCTGCCTCTA ATCAACATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5066676	WI_WGS_6_136873089	WI	MOUSE	f	SNP	G		A
ss133840243	ENSMUSSNP5707639	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss321996245	CHEV_6_136465549	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3690564					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136494026 () rs orientation: forward

Symbol	Name	Function Class
Atf7ip	activating transcription factor 7 interacting protein	1761 bp upstream
Cpgi18104	CpG island 18104	1573 bp proximal
Gm44140	predicted gene, 44140	within coordinates
Rr133547	regulatory region 133547	1375 bp proximal
Rr145858	regulatory region 145858	1174 bp proximal
Rr400014	regulatory region 400014	1540 bp upstream
Rr400015	regulatory region 400015	1938 bp upstream
Tssr59315	transcription start site region 59315	1758 bp upstream
Tssr59316	transcription start site region 59316	1792 bp upstream
Tssr59317	transcription start site region 59317	1838 bp upstream
Tssr63803	transcription start site region 63803	1470 bp downstream
Tssr63804	transcription start site region 63804	1733 bp downstream