rs36906676 SNP Detail

Summary

• ID
  rs36906676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37165310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCTTAG AGATTAAAAA
  AAAACAAACC TGAAATGGAG TCTACAAAGA AAAGGATGTT TTACAGAGAG AAAACTTTCC
  AGATTATCTG ACTCTAGTCT GTCATTTATC CTGATTTTAG TTTTTCTTGA CATTGAGCAA
  TTTTAGTCTC TGAAGTTGCA GCTAATTGAT AAGTCATATA AAATATGTCC ACTAGTGAGA
  Y
  AGCTTCAAGA GTCTTAATGT ATAAATGAGC TTATTTATAT TATGCTTTTT AAAATTGTGG
  TAAAATATAC ATAGCACAAA ACCTTATCAT CTCAACCACC TTTAAATGTA AAGTCAGGGC
  AGCTAAAGTC AGGGACAGCA AGTGTACTGT GCGCCCATCG CTACCATCCA CATCCACCTT
  ACGGCAACTC TCCCCTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50674842	NES14008211	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C		C	C	T		C
ss322906501	CHEV_9_37061599	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36906676					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674842	NES14008211	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37165310 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	1158 bp proximal
Gm10177	predicted gene 10177	833 bp downstream
Gm48081	predicted gene, 48081	1484 bp upstream
Gm65989	predicted gene, 65989	649 bp downstream
Rr676656	regulatory region 676656	660 bp proximal
Rr676657	regulatory region 676657	1390 bp proximal
Rr676658	regulatory region 676658	1495 bp proximal
Rr676659	regulatory region 676659	1714 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	within coordinates
Tssr88821	transcription start site region 88821	1343 bp downstream
Tssr88822	transcription start site region 88822	1367 bp downstream
Tssr88823	transcription start site region 88823	1389 bp downstream
Tssr88824	transcription start site region 88824	1415 bp downstream
Tssr88825	transcription start site region 88825	1430 bp downstream
Tssr88826	transcription start site region 88826	1516 bp downstream
Tssr88827	transcription start site region 88827	1609 bp downstream
Tssr88828	transcription start site region 88828	1632 bp downstream
Tssr88829	transcription start site region 88829	1655 bp downstream
Tssr88830	transcription start site region 88830	1671 bp downstream
Tssr88831	transcription start site region 88831	1716 bp downstream