rs3690685 SNP Detail

Summary

• ID
  rs3690685
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102490801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCAACCTC AGACAAAGAA AATACGTCTA AATCTGCCCA
  TCTTCATCCA AGAGAAAGAA CCTATTCATC TATTTCTCTC ATCCCACGAA TCTTTCCAAA
  S
  ATGCCTCGCA TCTTGTCTGA CATAAAATTT CTTCACATTG CTTATTTACC AGTGTGGACC
  TTTGGAGTGG TTACTTATCA GAAAAGGTGC TCTACTTTG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss5066797	WI_WGS_2_103482814	WI	MOUSE	f	SNP	G		C	G
ss45357042	mCV23733511	ABI	CRAMUS_MOUSE	f	SNP		G	C
ss147119800	ENSMUSSNP2773627	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320439910	CHEV_2_102500613	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs3690685					SNP	G	G	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102490801 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	701 bp distal
Gm57687	predicted gene, 57687	within coordinates
Rr561713	regulatory region 561713	1787 bp distal
Rr561714	regulatory region 561714	1644 bp distal
Rr561715	regulatory region 561715	1165 bp distal
Rr561716	regulatory region 561716	380 bp distal
Rr561717	regulatory region 561717	1841 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19100	transcription start site region 19100	1876 bp downstream
Tssr19101	transcription start site region 19101	1787 bp downstream
Tssr19102	transcription start site region 19102	1761 bp downstream
Tssr19103	transcription start site region 19103	1714 bp downstream
Tssr19104	transcription start site region 19104	1692 bp downstream
Tssr19105	transcription start site region 19105	1622 bp downstream
Tssr19106	transcription start site region 19106	1604 bp downstream
Tssr19107	transcription start site region 19107	1584 bp downstream
Tssr19108	transcription start site region 19108	1548 bp downstream
Tssr19109	transcription start site region 19109	1506 bp downstream
Tssr19110	transcription start site region 19110	1224 bp downstream