rs3690724 SNP Detail

Summary

• ID
  rs3690724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:33702571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTTAGTA AGGGGAAAAA
  AGTTAAATTG TAAAAAAGCA ATTAACTCCT TGTACCTCTG GGTGGCAGCA TTGAGTCACA
  ATTAACCAGC TACTGACTGA AAATAGCTAA AATGTGATAA GCTCTTATAT CTCTAATTAG
  AAAACTTTTA CCAAATTCAA GTGCATGATT GAATGAATGC TTATTAGTAA TATTACCACT
  Y
  TTTCTTGAAA GAGTATCAAA AGTAGCCTTC CTAATGAAAT CCCTTATATA CTTAAATCCC
  AAATGCAGAG CCTCTCTCTC TCATTAGGTA TCACCAATTA TTTTCAGTAT TTTCCAGTAA
  AAACTTATTT CAAAGAACGC ACAATCATAT TCAGCCCATG GCACTCTGGT TCCGCTGATG
  TTACTCTGAG TTTTTCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss5066838	WI_WGS_1_34117079	WI	MOUSE	f	SNP	T			C
ss45149096	mCV24131943	ABI	CRAMUS_MOUSE	f	SNP		T	C	C
ss148875588	ENSMUSSNP2528060	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs3690724					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:33702571 () rs orientation: forward

Symbol	Name	Function Class
Prim2	DNA primase, p58 subunit	within coordinates
Rr15702	regulatory region 15702	within coordinates
Rr15703	regulatory region 15703	1430 bp proximal
Rr36335	regulatory region 36335	15 bp distal
Rr395983	regulatory region 395983	144 bp downstream