rs36908352 SNP Detail

Summary

• ID
  rs36908352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124715627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGCGCCA CCACGCCGGG
  CGCATCCACT CTTTCAAAGA ACACTGGCTG CTTCTCTGTG CCAGCCACTG CACGAGAGAG
  GGCCCTGCTC TCACGGAGCA ATAAATCAGC ACAGAAAGAG ACTGACACCT TACAAACTGG
  AACAATGACG GGAAAAGGCA GGATGACACA TAAGGTGAAG CGCCTTTGCG AGGCTGGCCT
  Y
  TTGCATTACA GAAACCAAGA CTTGATGAAG GACTCAGACA TGTGAAGACC AGTGAGGACA
  GCTCCTGTGT AGATGTCAGG GATGCCAAGG CCTAAGAAAG GGACACACTT GGTTTAAAAC
  AAACCAAAAA ACCAAGAAGG CCAAATGGCA AAGTAGGCAA ACTGCTTTGT GGTGCCGGCC
  TGGTGACCTG AATAAAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51196610	NES13821397	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36908352					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51196610	NES13821397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124715627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16619	CpG island 16619	1120 bp proximal
Eif2b1	eukaryotic translation initiation factor 2B, subunit alpha	within coordinates
Gtf2h3	general transcription factor IIH, polypeptide 3	1584 bp upstream
Rr399368	regulatory region 399368	1412 bp upstream
Rr620506	regulatory region 620506	1089 bp proximal
Rr620507	regulatory region 620507	1557 bp proximal
Rr620508	regulatory region 620508	1587 bp proximal
Tssr48907	transcription start site region 48907	1551 bp upstream
Tssr48908	transcription start site region 48908	1570 bp upstream
Tssr53375	transcription start site region 53375	1459 bp downstream
Tssr53376	transcription start site region 53376	1481 bp downstream
Tssr53377	transcription start site region 53377	1519 bp downstream